George A. and Hilda M. Daubert Professor of Chemistry , Department of Chemistry
Update: 2024-07-17

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Field: Chemistry
Research area: interdisciplinary fields of organic chemistry, chemical biology, and biophysics
Education:
Bachelor's degree
, Miami University
Doctor of Philosophy-PhD
, Columbia University
Postdocs
, Caltech
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Eric Kool is a renowned chemist recognized for his pioneering work in the field of nucleic acid chemistry, particularly in the development of novel chemical tools and methodologies for studying DNA and RNA. His research has focused on expanding the chemical diversity of nucleobases, the fundamental building blocks of nucleic acids, to create synthetic analogs with unique properties. These modified nucleobases, often referred to as "non-canonical" or "synthetic" bases, have proven invaluable in probing the structural and functional aspects of nucleic acids.
Kool's contributions have been instrumental in the advancement of bioorganic chemistry and molecular biology. He has developed innovative methods for the synthesis of nucleoside analogs, which are compounds similar to naturally occurring nucleosides but with chemically altered structures. These analogs have been used to explore the recognition and replication processes of nucleic acids, providing insights into the mechanisms of cellular information transfer.
Additionally, Kool's work on fluorescent nucleoside analogs has facilitated the visualization and tracking of nucleic acid dynamics in living cells, contributing to the field of live-cell imaging. His research has also led to the discovery of new types of base pairs that can form under physiological conditions, broadening the genetic alphabet beyond the canonical A, T, C, G for DNA and A, U, C, G for RNA.
Overall, Eric Kool's research has significantly expanded the chemical toolbox available to biologists and chemists, enabling the investigation of biological processes with greater precision and depth. His innovations continue to drive forward the fields of chemical biology and genomics, offering new strategies for therapeutic intervention and genetic engineering.
Dr. Eric Kool embarked on his academic journey by earning a Ph.D. in Chemistry from Columbia University, subsequently honing his expertise in nucleic acid chemistry through postdoctoral research at the California Institute of Technology (Caltech). Launching his professional tenure at the University of Rochester, he transitioned to Stanford University in 1999, assuming the esteemed position of the George and Hilda Daubert Professor of Chemistry. In this capacity, he imparts knowledge in Organic Chemistry and Chemical Biology to both undergraduates and graduates.
Under Dr. Kool's direction, the laboratory employs chemical methodologies to dissect the intricate architectures, dynamic interactions, and vital biological functions of nucleic acids, along with the enzymes that govern their metabolism. Central to their approach is the strategic design and synthesis of molecular entities, followed by meticulous examination of their structure and function, conducted both in vitro and in vivo. This research paradigm serves dual purposes: deepening our foundational comprehension of biological processes and translating this erudition into tangible benefits for biomedical applications.
Currently, Dr. Kool's research endeavors are focused on crafting sophisticated chemical instruments to chart the complex landscape of RNA structures and interactions within cellular environments. Additionally, his team is pioneering techniques for enhancing the stability and versatility of RNA molecules, as well as devising innovative probes to elucidate the intricacies of DNA repair mechanisms, particularly their implications in cancer pathology.
- Designer Fluorescent Adenines Enable Real-Time Monitoring of MUTYH Activity. ACS central scienceZhu, R. Y., Majumdar, C. n., Khuu, C. n., De Rosa, M. n., Opresko, P. L., David, S. S., Kool, E. T.2020; 6 (10): 1735–42
- Site-Selective RNA Functionalization via DNA-Induced Structure. Journal of the American Chemical SocietyXiao, L. n., Habibian, M. n., Kool, E. T.2020; 142 (38): 16357–63
- Ultrafast Oxime Formation Enables Efficient Fluorescence Light-up Measurement of DNA Base Excision. Journal of the American Chemical SocietyWilson, D. L., Kool, E. T.2019
- Organocatalytic removal of formaldehyde adducts from RNA and DNA bases NATURE CHEMISTRYKarmakar, S., Harcourt, E. M., Hewings, D. S., Lovejoy, A. F., Kurtz, D. M., Ehrenschwender, T., Barandun, L. J., Roost, C., Alizadeh, A. A., Kool, E. T.2015; 7 (9): 752-758
- In Vitro Fluorogenic Real-Time Assay of the Repair of Oxidative DNA Damage CHEMBIOCHEMEdwards, S. K., Ono, T., Wang, S., Jiang, W., Franzini, R. M., Jung, J. W., Chan, K. M., Kool, E. T.2015; 16 (11): 1637-1646
- Structural imprints in vivo decode RNA regulatory mechanisms. NatureSpitale, R. C., Flynn, R. A., Zhang, Q. C., Crisalli, P., Lee, B., Jung, J., Kuchelmeister, H. Y., Batista, P. J., Torre, E. A., Kool, E. T., Chang, H. Y.2015; 519 (7544): 486-490
- Structure and Thermodynamics of N-6-Methyladenosine in RNA: A Spring-Loaded Base Modification JOURNAL OF THE AMERICAN CHEMICAL SOCIETYRoost, C., Lynch, S. R., Batista, P. J., Qu, K., Chang, H. Y., Kool, E. T.2015; 137 (5): 2107-2115
- New Organocatalyst Scaffolds with High Activity in Promoting Hydrazone and Oxime Formation at Neutral pH. Organic lettersLarsen, D., Pittelkow, M., Karmakar, S., Kool, E. T.2015; 17 (2): 274-277
- Large-Scale Detection of Metals with a Small Set of Fluorescent DNA-Like Chemosensors JOURNAL OF THE AMERICAN CHEMICAL SOCIETYYuen, L. H., Franzini, R. M., Tan, S. S., Kool, E. T.2014; 136 (41): 14576-14582
- Artificial Genetic Sets Composed of Size-Expanded Base Pairs ANGEWANDTE CHEMIE-INTERNATIONAL EDITIONWinnacker, M., Kool, E. T.2013; 52 (48): 12498-12508
- Genetically encoded multispectral labeling of proteins with polyfluorophores on a DNA backbone. Journal of the American Chemical SocietySingh, V., Wang, S., Kool, E. T.2013; 135 (16): 6184-6191
- Water-Soluble Organocatalysts for Hydrazone and Oxime Formation JOURNAL OF ORGANIC CHEMISTRYCrisalli, P., Kool, E. T.2013; 78 (3): 1184-1189
- RNA SHAPE analysis in living cells. Nature chemical biologySpitale, R. C., Crisalli, P., Flynn, R. A., Torre, E. A., Kool, E. T., Chang, H. Y.2013; 9 (1): 18-20
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